STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29405Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology (1053 aa)    
Predicted Functional Partners:
CN09_29400
RNA-binding protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.954
CN09_29390
CarD family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.868
CN09_29395
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
       0.848
CN09_34305
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence
   
 
 0.808
CN09_02050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.807
CN09_01770
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.801
CN09_27580
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.798
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
  
 
 0.795
CN09_28080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.774
CN09_25525
FkbM family methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.765
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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