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CN09_29490 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29490" - Short-chain dehydrogenase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29490Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)    
Predicted Functional Partners:
CN09_21415
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
       
0.547
CN09_02240
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (272 aa)
 
          0.543
CN09_24645
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
   
          0.539
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
 
  0.527
CN09_28495
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
   
          0.489
CN09_29485
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
              0.488
CN09_19730
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (286 aa)
 
     
  0.470
CN09_03670
Allantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
         
  0.423
CN09_20970
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
   
          0.416
CN09_30360
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
 
  0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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