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CN09_29580 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29580" - Protein ndvB in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Databases
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[Homology]
Score
CN09_29580Protein ndvB; Derived by automated computational analysis using gene prediction method- Protein Homology (2836 aa)    
Predicted Functional Partners:
ndvA
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP- binding domain (NBD) is responsible for energy generation (589 aa)
 
     
  0.920
CN09_32775
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)
 
          0.699
CN09_29575
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (406 aa)
         
  0.663
CN09_15935
Gluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
              0.652
CN09_28945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
              0.571
CN09_01675
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method- Protein Homology (542 aa)
         
  0.524
CN09_01465
Beta-glucosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
         
  0.441
CN09_01670
Glycogen debranching protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 13 family (657 aa)
         
  0.434
CN09_29350
Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
 
          0.429
CN09_28745
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (441 aa)
 
          0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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