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CN09_29625 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29625" - Peptidase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29625Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)    
Predicted Functional Partners:
CN09_29620
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (546 aa)
 
          0.848
CN09_29605
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
          0.795
CN09_29600
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
 
          0.782
CN09_29610
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
     
  0.770
CN09_29615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)
 
          0.765
CN09_01580
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
          0.690
CN09_29630
Lysine transporter LysE; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
              0.503
CN09_24680
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (449 aa)
 
   
  0.446
CN09_29595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (62 aa)
              0.443
CN09_26565
Glutamine amidotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
            0.434
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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