KEA03743.1 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

KEA03743.1

Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)

Predicted Functional Partners:

CN09_20125

0.974

CN09_29710

0.922

CN09_29725

0.859

CN09_34615

0.839

CN09_32435

0.769

CN09_20120

0.729

CN09_01160

0.706

CN09_15005

0.564

CN09_31105

0.534

CN09_32430

0.526

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01160	CN09_15005	CN09_01160	CN09_15005	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.586
CN09_01160	CN09_20120	CN09_01160	CN09_20120	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.407
CN09_01160	CN09_20125	CN09_01160	CN09_20125	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.710
CN09_01160	CN09_29710	CN09_01160	CN09_29710	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711
CN09_01160	CN09_29725	CN09_01160	CN09_29725	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.841
CN09_01160	CN09_32430	CN09_01160	CN09_32430	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	0.721
CN09_01160	CN09_32435	CN09_01160	CN09_32435	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.920
CN09_01160	CN09_34615	CN09_01160	CN09_34615	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.713
CN09_01160	KEA03743.1	CN09_01160	CN09_29715	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_15005	CN09_01160	CN09_15005	CN09_01160	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	0.586
CN09_15005	CN09_20120	CN09_15005	CN09_20120	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_15005	CN09_20125	CN09_15005	CN09_20125	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.561
CN09_15005	CN09_29710	CN09_15005	CN09_29710	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.608
CN09_15005	CN09_29725	CN09_15005	CN09_29725	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.852
CN09_15005	CN09_32430	CN09_15005	CN09_32430	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology	0.423
CN09_15005	CN09_34615	CN09_15005	CN09_34615	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.606
CN09_15005	KEA03743.1	CN09_15005	CN09_29715	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- Protein Homology	0.564
CN09_20120	CN09_01160	CN09_20120	CN09_01160	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family	0.407
CN09_20120	CN09_15005	CN09_20120	CN09_15005	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.445
CN09_20120	CN09_20125	CN09_20120	CN09_20125	DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.858

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