STRINGSTRING
CN09_29795 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29795" - Transposase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29795Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)    
Predicted Functional Partners:
CN09_00560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
   
          0.699
CN09_26155
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (82 aa)
   
          0.694
CN09_20290
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
          0.683
CN09_33240
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
 
          0.679
CN09_17125
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
 
          0.672
CN09_12855
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
 
          0.668
CN09_29820
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (96 aa)
 
          0.610
CN09_32200
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
     
  0.571
CN09_22625
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
     
  0.568
CN09_12825
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (76 aa)
 
     
  0.548
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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