CN09_29805 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_29805

Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)

Predicted Functional Partners:

CN09_16235

0.673

CN09_10645

0.652

recO

0.638

CN09_27555

0.623

CN09_04330

0.588

CN09_17775

0.588

CN09_11025

0.579

CN09_28440

0.514

CN09_28435

0.495

CN09_10930

0.488

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04330	CN09_10645	CN09_04330	CN09_10645	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	0.495
CN09_04330	CN09_10930	CN09_04330	CN09_10930	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.499
CN09_04330	CN09_16235	CN09_04330	CN09_16235	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.631
CN09_04330	CN09_27555	CN09_04330	CN09_27555	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.524
CN09_04330	CN09_28435	CN09_04330	CN09_28435	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.507
CN09_04330	CN09_28440	CN09_04330	CN09_28440	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.858
CN09_04330	CN09_29805	CN09_04330	CN09_29805	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.588
CN09_04330	recO	CN09_04330	CN09_10970	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination	0.439
CN09_10645	CN09_04330	CN09_10645	CN09_04330	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.495
CN09_10645	CN09_10930	CN09_10645	CN09_10930	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.494
CN09_10645	CN09_11025	CN09_10645	CN09_11025	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.553
CN09_10645	CN09_16235	CN09_10645	CN09_16235	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.512
CN09_10645	CN09_17775	CN09_10645	CN09_17775	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.667
CN09_10645	CN09_27555	CN09_10645	CN09_27555	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_10645	CN09_29805	CN09_10645	CN09_29805	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.652
CN09_10645	recO	CN09_10645	CN09_10970	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination	0.752
CN09_10930	CN09_04330	CN09_10930	CN09_04330	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.499
CN09_10930	CN09_10645	CN09_10930	CN09_10645	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	0.494
CN09_10930	CN09_16235	CN09_10930	CN09_16235	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.653
CN09_10930	CN09_27555	CN09_10930	CN09_27555	Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.614

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