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CN09_29910 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29910" - Calcium-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_29910Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)    
Predicted Functional Partners:
CN09_09885
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (583 aa)
 
 
 
  0.619
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
   
          0.612
CN09_25560
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
   
          0.606
CN09_34310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (565 aa)
   
          0.583
CN09_12200
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (453 aa)
 
   
  0.558
CN09_04725
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
   
  0.557
CN09_15710
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
   
          0.551
CN09_06315
Ankyrin; Derived by automated computational analysis using gene prediction method- Protein Homology (591 aa)
 
 
 
  0.534
CN09_04545
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (481 aa)
   
          0.527
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (929 aa)
 
          0.518
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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