STRINGSTRING
CN09_29955 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_29955" - D-ala-D-ala transporter subunit in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_29955D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)    
Predicted Functional Partners:
CN09_29960
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
 
  0.974
CN09_29950
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.970
CN09_29965
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (528 aa)
   
  0.966
CN09_29945
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)
   
  0.959
CN09_23180
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
  0.842
CN09_29615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (355 aa)
 
  0.825
CN09_29605
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
  0.803
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
  0.793
CN09_33465
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
 
  0.792
CN09_15915
Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method- Protein Homology (334 aa)
 
  0.777
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]