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CN09_30055 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30055" - Pilus assembly protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_30055Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)    
Predicted Functional Partners:
CN09_30060
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (804 aa)
 
 
  0.997
CN09_30065
Spore coat protein u; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
 
 
  0.990
CN09_30050
Spore coat protein U; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
 
 
 
  0.989
CN09_22160
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
 
     
  0.733
CN09_25915
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (678 aa)
   
          0.554
CN09_21950
Autotransporter; Derived by automated computational analysis using gene prediction method- Protein Homology (927 aa)
 
     
  0.492
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
 
          0.482
CN09_33545
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
          0.462
CN09_27705
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
 
          0.448
CN09_26085
Calcium-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1557 aa)
 
     
  0.442
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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