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CN09_30065 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30065" - Spore coat protein u in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_30065Spore coat protein u; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)    
Predicted Functional Partners:
CN09_30055
Pilus assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
 
 
 
  0.990
CN09_30060
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (804 aa)
 
     
  0.988
CN09_30050
Spore coat protein U; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
 
       
0.908
CN09_25915
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (678 aa)
   
          0.582
CN09_30500
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (477 aa)
   
          0.534
CN09_22215
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method- Protein Homology (341 aa)
   
          0.516
CN09_25910
Peptidase M48; Derived by automated computational analysis using gene prediction method- Protein Homology (628 aa)
   
          0.513
CN09_30495
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
   
          0.505
CN09_31150
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
   
          0.502
CN09_02600
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
   
          0.466
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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