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CN09_30080 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30080" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
CN09_30080ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (560 aa)    
Predicted Functional Partners:
CN09_30090
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
 
 
  0.898
CN09_30085
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
 
  0.890
CN09_30095
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (540 aa)
 
   
  0.748
CN09_30075
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (450 aa)
              0.669
CN09_30100
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (544 aa)
 
   
  0.638
CN09_13190
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (383 aa)
 
  0.619
CN09_30070
Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
              0.563
CN09_13185
Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
 
  0.554
CN09_30105
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
              0.459
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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