STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30105GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (185 aa)    
Predicted Functional Partners:
CN09_30100
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.827
CN09_30110
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.730
CN09_30095
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.721
CN09_30075
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.658
CN09_24840
Protein involved in propionate catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.612
CN09_28090
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.609
CN09_30090
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.597
CN09_30070
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.564
CN09_24780
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.550
CN09_31535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.547
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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