STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30135Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology (392 aa)    
Predicted Functional Partners:
CN09_30145
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.857
CN09_30140
Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.846
CN09_30150
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    
0.799
CN09_30155
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.798
CN09_30160
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.789
CN09_23120
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.757
CN09_30230
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.691
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates
 
  
 0.628
CN09_26600
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.625
CN09_21055
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.615
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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