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CN09_30165 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30165" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_30165Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)    
Predicted Functional Partners:
CN09_30170
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (536 aa)
 
     
  0.538
CN09_32830
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.500
CN09_31390
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.500
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.472
CN09_24935
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
          0.470
CN09_26675
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
   
          0.424
CN09_22450
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
   
   
  0.422
CN09_30145
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (113 aa)
   
          0.402
CN09_20895
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.402
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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