STRINGSTRING
CN09_30195 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30195" - Acyl-CoA dehydrogenase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30195Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (413 aa)    
Predicted Functional Partners:
CN09_30230
Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
 
     
  0.769
CN09_23120
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
 
     
  0.744
CN09_30200
NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
        0.728
CN09_30220
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
          0.722
CN09_30215
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
          0.713
CN09_30210
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
              0.642
CN09_30205
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (311 aa)
              0.640
CN09_30235
Desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
        0.605
CN09_21055
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)
     
  0.581
CN09_15305
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (736 aa)
   
 
  0.557
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (5%) [HD]