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CN09_30245 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30245" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30245ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (534 aa)    
Predicted Functional Partners:
CN09_30220
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
  0.808
CN09_30215
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
   
  0.802
CN09_24715
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
 
  0.705
CN09_24710
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
   
  0.695
CN09_30235
Desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
          0.613
CN09_30145
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (113 aa)
 
          0.607
CN09_31645
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
   
  0.554
CN09_30230
Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
 
          0.543
CN09_30270
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
  0.538
CN09_30275
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
 
  0.531
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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