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CN09_30265 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30265" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30265ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (560 aa)    
Predicted Functional Partners:
CN09_30275
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
 
 
  0.936
CN09_30270
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
 
  0.920
CN09_30260
Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
 
          0.907
CN09_30255
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (202 aa)
 
          0.836
CN09_30280
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (544 aa)
   
  0.813
CN09_30250
Alkyl hydroperoxide reductase AhpD; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (200 aa)
          0.783
CN09_13190
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (383 aa)
 
  0.590
CN09_21600
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
 
  0.526
CN09_13185
Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
 
  0.523
CN09_21595
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)
 
 
 
  0.475
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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