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CN09_30295 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30295" - Uncharacterized protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30295Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (432 aa)    
Predicted Functional Partners:
CN09_16105
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (439 aa)
          0.800
CN09_16100
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
            0.724
CN09_31330
Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP); Belongs to the thiamine-phosphate synthase family (204 aa)
 
            0.717
tldD
Protease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
              0.697
CN09_16095
Glycolate oxidase subunit GlcD; Derived by automated computational analysis using gene prediction method- Protein Homology (479 aa)
            0.528
CN09_15125
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
              0.485
CN09_01610
NAD(P) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane (464 aa)
              0.485
CN09_01600
NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
              0.477
CN09_15095
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
              0.418
CN09_22595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (113 aa)
              0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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