STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30345Hydroxypyruvate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (422 aa)    
Predicted Functional Partners:
CN09_30340
Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.881
CN09_30335
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.787
CN09_02010
Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family
 
  
 0.618
CN09_30330
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.602
CN09_30350
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.565
CN09_30325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.533
CN09_30320
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily
       0.484
CN09_03710
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.468
CN09_24250
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family
 
  
 0.446
CN09_34350
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family
 
  
 0.425
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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