STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30350GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (152 aa)    
Predicted Functional Partners:
gatB
Glutamyl-trna amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln)
       0.754
trpF
N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family
     
 0.700
CN09_30345
Hydroxypyruvate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.570
CN09_30340
Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
   0.569
CN09_03405
Flavin-nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.535
CN09_30335
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.497
ihfB
This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
     
 0.481
trmD
Trna (guanine-n1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs
       0.478
rimM
An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
   
 
 0.454
CN09_14230
Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.435
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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