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CN09_30360 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30360" - 3-beta hydroxysteroid dehydrogenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_303603-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)    
Predicted Functional Partners:
CN09_30355
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
          0.822
CN09_02245
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (286 aa)
 
          0.804
CN09_19835
Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
 
  0.682
CN09_25270
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
   
 
  0.633
CN09_14930
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (282 aa)
 
 
  0.624
CN09_02805
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
 
 
  0.612
CN09_33180
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
          0.590
CN09_18805
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
          0.590
CN09_14045
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
 
  0.587
CN09_14800
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (280 aa)
 
     
  0.566
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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