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CN09_30375 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30375" - MFS transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30375MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (428 aa)    
Predicted Functional Partners:
CN09_30365
Dihydrodipicolinate synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DapA family (309 aa)
   
   
  0.790
CN09_30370
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (330 aa)
              0.770
CN09_05195
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (427 aa)
   
   
  0.657
CN09_01270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
   
        0.580
CN09_30380
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
     
 
  0.535
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
 
   
  0.526
CN09_23790
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (501 aa)
 
   
  0.522
CN09_28705
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)
 
 
 
  0.510
CN09_26650
L-asparagine permease; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
 
   
  0.493
CN09_24995
Acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (685 aa)
   
   
  0.460
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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