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CN09_30430 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30430" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30430Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (527 aa)    
Predicted Functional Partners:
CN09_11685
Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
 
   
  0.831
CN09_11680
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
          0.801
CN09_16030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (99 aa)
   
          0.731
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.717
CN09_25430
Acetone carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
   
          0.673
CN09_18865
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (202 aa)
 
     
  0.659
CN09_24520
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (679 aa)
 
   
  0.623
CN09_24460
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
   
          0.604
CN09_20220
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
   
          0.588
CN09_25635
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.576
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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