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CN09_30530 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30530" - Beta-mannosidase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30530Beta-mannosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 26 family (315 aa)    
Predicted Functional Partners:
CN09_30545
N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (611 aa)
          0.994
CN09_30535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
 
          0.979
CN09_30525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)
 
          0.955
CN09_30555
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
 
          0.947
CN09_30540
UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (473 aa)
              0.889
CN09_30550
UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family (328 aa)
 
          0.826
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
 
          0.781
CN09_20410
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (696 aa)
         
  0.608
CN09_25845
Deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
              0.561
CN09_00240
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (487 aa)
 
          0.543
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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