CN09_30575 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_30575

Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology (171 aa)

Predicted Functional Partners:

CN09_30595

0.999

CN09_30585

0.998

CN09_30590

0.976

CN09_30580

0.972

CN09_30560

0.777

CN09_30570

0.759

CN09_25635

0.747

CN09_25615

0.741

CN09_29850

0.714

CN09_24810

0.708

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_24810	CN09_25615	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.662
CN09_24810	CN09_25635	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.729
CN09_24810	CN09_30560	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.438
CN09_24810	CN09_30575	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.708
CN09_24810	CN09_30580	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.518
CN09_24810	CN09_30585	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.477
CN09_24810	CN09_30590	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.598
CN09_24810	CN09_30595	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.442
CN09_25615	CN09_24810	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.662
CN09_25615	CN09_25635	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.772
CN09_25615	CN09_29850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.670
CN09_25615	CN09_30575	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.741
CN09_25615	CN09_30580	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.555
CN09_25615	CN09_30585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.589
CN09_25615	CN09_30590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.636
CN09_25615	CN09_30595	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.497
CN09_25635	CN09_24810	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.729
CN09_25635	CN09_25615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.772
CN09_25635	CN09_29850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.669
CN09_25635	CN09_30560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.424