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CN09_30580 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_30580" - SAM-dependent methlyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30580SAM-dependent methlyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)    
Predicted Functional Partners:
CN09_30595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
 
          0.999
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method- Protein Homology (786 aa)
 
          0.977
CN09_30575
Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method- Protein Homology (171 aa)
 
          0.972
CN09_30590
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (184 aa)
 
          0.967
CN09_25635
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.738
CN09_30570
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (567 aa)
              0.733
CN09_29850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
   
          0.651
CN09_05975
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
 
          0.619
CN09_29765
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
 
          0.592
CN09_30545
N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (611 aa)
 
 
 
  0.575
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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