CN09_30880 protein (Agrobacterium rhizogenes)

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second shell of interactors

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experimentally determined

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gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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Score

CN09_30880

Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (897 aa)

Predicted Functional Partners:

CN09_28835

0.891

CN09_00915

0.891

CN09_30860

0.739

CN09_24685

0.718

CN09_30875

0.685

CN09_20885

0.650

CN09_30900

0.632

CN09_30865

0.619

CN09_21975

0.612

CN09_30870

0.611

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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node1	node2	node1 annotation	node2 annotation	score
CN09_00915	CN09_21975	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_00915	CN09_28835	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_00915	CN09_30880	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.891
CN09_20885	CN09_30860	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_20885	CN09_30880	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.650
CN09_20885	CN09_30900	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.443
CN09_21975	CN09_00915	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_21975	CN09_28835	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_21975	CN09_30880	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.612
CN09_24685	CN09_30880	Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.718
CN09_28835	CN09_00915	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_28835	CN09_21975	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_28835	CN09_30880	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.891
CN09_30860	CN09_20885	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_30860	CN09_30865	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.733
CN09_30860	CN09_30870	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.709
CN09_30860	CN09_30875	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.725
CN09_30860	CN09_30880	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.739
CN09_30860	CN09_30900	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.816
CN09_30865	CN09_30860	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.733