STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_30945GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (336 aa)    
Predicted Functional Partners:
CN09_30900
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.871
CN09_30920
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.826
CN09_30905
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.790
CN09_30925
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.789
CN09_30890
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.765
CN09_30915
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.750
CN09_30860
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.733
CN09_30955
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.665
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.640
CN09_20760
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily
  
     0.610
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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