STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31005Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family (257 aa)    
Predicted Functional Partners:
CN09_31000
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
    0.952
CN09_30985
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.941
CN09_31035
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.933
CN09_30995
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.924
CN09_30990
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    0.892
CN09_31010
Belongs to the LysR transcriptional regulatory family
 
     0.855
ppk2
UDP-galactose-lipid carrier transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.773
putA
Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source
  
    0.754
CN09_31040
Acetyl-coa carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
       0.754
CN09_30980
S-adenosylmethionine: 2-demethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.749
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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