CN09_31055 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_31055

Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (579 aa)

Predicted Functional Partners:

CN09_31060

0.955

CN09_31065

0.810

CN09_03750

0.783

CN09_18630

0.782

CN09_20940

0.760

CN09_32885

0.718

CN09_31090

0.716

CN09_10375

0.683

CN09_31085

0.669

CN09_31070

0.611

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03750	CN09_31055	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.783
CN09_10375	CN09_31055	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.683
CN09_18630	CN09_31055	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_20940	CN09_31055	Glycerol kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.760
CN09_31055	CN09_03750	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.783
CN09_31055	CN09_10375	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.683
CN09_31055	CN09_18630	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family	0.782
CN09_31055	CN09_20940	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.760
CN09_31055	CN09_31060	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	0.955
CN09_31055	CN09_31065	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Derived by automated computational analysis using gene prediction method- Protein Homology	0.810
CN09_31055	CN09_31070	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.611
CN09_31055	CN09_31085	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.669
CN09_31055	CN09_31090	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	0.716
CN09_31055	CN09_32885	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	0.718
CN09_31060	CN09_31055	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.955
CN09_31060	CN09_31065	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	Derived by automated computational analysis using gene prediction method- Protein Homology	0.853
CN09_31060	CN09_31070	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.751
CN09_31060	CN09_31085	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.808
CN09_31065	CN09_31055	Derived by automated computational analysis using gene prediction method- Protein Homology	Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.810
CN09_31065	CN09_31060	Derived by automated computational analysis using gene prediction method- Protein Homology	Xylulose kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FGGY kinase family	0.853