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CN09_31165 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31165" - MFS transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
CN09_31165MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (627 aa)    
Predicted Functional Partners:
CN09_06915
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
              0.605
CN09_15885
Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
   
 
  0.537
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (467 aa)
              0.520
proS
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily (440 aa)
   
   
  0.458
trkD
Probable potassium transport system protein kup; Transport of potassium into the cell (633 aa)
 
     
  0.437
CN09_29435
Polyhydroxyalkanoate synthesis repressor PhaR; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
              0.434
CN09_06905
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (332 aa)
              0.428
CN09_07090
Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
              0.420
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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