STRINGSTRING
CN09_31255 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31255" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31255Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)    
Predicted Functional Partners:
CN09_31260
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
          0.796
CN09_31250
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
              0.789
CN09_31240
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
 
     
  0.746
CN09_31245
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
              0.697
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.680
CN09_19020
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
 
          0.614
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.564
CN09_31870
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)
 
          0.506
CN09_19015
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
 
          0.465
CN09_22320
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
     
  0.451
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (20%) [HD]