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CN09_31260 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31260" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31260ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)    
Predicted Functional Partners:
CN09_31255
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
          0.796
CN09_31250
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
 
   
  0.790
CN09_31245
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
 
 
  0.678
CN09_31240
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (424 aa)
 
     
  0.619
CN09_31550
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
   
  0.482
CN09_31555
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
 
   
  0.477
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.436
CN09_32135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.428
CN09_33065
Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)
 
          0.423
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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