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CN09_31265 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31265" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_31265Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)    
Predicted Functional Partners:
CN09_20895
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.674
CN09_22450
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
   
   
  0.670
CN09_18425
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.670
CN09_31270
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
          0.665
CN09_21550
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.657
CN09_14925
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
   
          0.639
CN09_32330
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
   
          0.619
CN09_32830
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.611
CN09_15880
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
   
          0.593
CN09_31460
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.588
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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