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CN09_31300 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31300" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31300Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (106 aa)    
Predicted Functional Partners:
CN09_31305
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
 
          0.763
CN09_31295
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
 
          0.697
CN09_22130
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
   
          0.479
CN09_12720
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)
   
          0.474
CN09_31655
Regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (784 aa)
   
          0.460
CN09_31290
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
 
          0.434
CN09_01205
Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
   
          0.417
CN09_12695
P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
   
          0.414
CN09_31285
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
 
          0.412
CN09_23310
6-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.412
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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