STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31395Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (202 aa)    
Predicted Functional Partners:
CN09_31400
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.978
CN09_16655
Ribonuclease H; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.760
CN09_04600
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.734
CN09_10895
Putative SOS response-associated peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SOS response-associated peptidase family
       0.709
CN09_07565
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.705
CN09_28065
Uroporphyrinogen III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.693
CN09_12115
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
       0.652
CN09_29255
Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.652
CN09_29460
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.601
CN09_02780
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.597
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (18%) [HD]