STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31435Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (515 aa)    
Predicted Functional Partners:
CN09_31440
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.966
CN09_31445
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
 
 
 0.909
CN09_31455
Creatininase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.899
CN09_31450
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily
 
 
 0.875
CN09_33420
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.759
CN09_26420
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.727
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.703
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.691
CN09_33465
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.691
CN09_33415
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.689
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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