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CN09_31460 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31460" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31460Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)    
Predicted Functional Partners:
CN09_32960
Putative hydro-lyase CN09_32960; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the D-glutamate cyclase family (268 aa)
              0.744
CN09_22450
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
   
          0.706
CN09_18425
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.693
CN09_21550
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.651
CN09_21685
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.639
CN09_20895
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.591
CN09_31465
2-hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
              0.591
CN09_31265
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.588
CN09_21695
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
   
          0.560
CN09_30330
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.541
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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