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CN09_31470 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31470" - Spermidine/putrescine ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_31470Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)    
Predicted Functional Partners:
CN09_31490
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)
 
          0.771
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
   
  0.762
CN09_31480
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
   
  0.750
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
   
  0.748
CN09_12905
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
 
   
  0.745
CN09_31960
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
   
  0.670
CN09_33365
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.647
CN09_12910
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
   
  0.644
CN09_32190
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
   
  0.634
CN09_32185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
   
  0.626
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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