CN09_31485 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_31485

Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (263 aa)

Predicted Functional Partners:

CN09_31480

0.942

CN09_33370

0.852

CN09_23100

0.836

CN09_32185

0.824

CN09_01060

0.806

CN09_30855

0.806

CN09_33375

0.800

CN09_30935

0.793

CN09_00605

0.787

CN09_15820

0.782

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CN09_00605	CN09_15820	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.758
CN09_00605	CN09_31485	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.787
CN09_00605	CN09_33375	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.636
CN09_01060	CN09_15820	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.754
CN09_01060	CN09_31485	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.806
CN09_01060	CN09_33375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.621
CN09_15820	CN09_00605	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.758
CN09_15820	CN09_01060	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.754
CN09_15820	CN09_23100	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.720
CN09_15820	CN09_30855	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.756
CN09_15820	CN09_30935	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.711
CN09_15820	CN09_31480	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.779
CN09_15820	CN09_31485	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_15820	CN09_32185	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.752
CN09_15820	CN09_33370	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_23100	CN09_15820	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.720
CN09_23100	CN09_31485	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.836
CN09_23100	CN09_33375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.723
CN09_30855	CN09_15820	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.756
CN09_30855	CN09_31485	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.806

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About