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CN09_31490 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31490" - 4-hydroxy-4-methyl-2-oxoglutarate aldolase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_314904-hydroxy-4-methyl-2-oxoglutarate aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology (222 aa)    
Predicted Functional Partners:
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family (888 aa)
              0.852
CN09_05365
4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)
 
     
  0.786
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.786
CN09_27090
2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
     
  0.772
CN09_31470
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)
 
          0.771
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
              0.770
CN09_31480
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
              0.766
CN09_33095
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (360 aa)
 
     
  0.764
CN09_05320
3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
     
  0.760
CN09_27255
Nitrilase; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
              0.706
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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