CN09_31510 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_31510

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (328 aa)

Predicted Functional Partners:

CN09_31530

0.989

CN09_31525

0.972

CN09_31520

0.966

CN09_31515

0.956

CN09_26235

0.825

CN09_07615

0.815

CN09_26240

0.795

CN09_00875

0.793

CN09_07610

0.789

CN09_00870

0.755

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (6%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00870	CN09_00875	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.917
CN09_00870	CN09_07615	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Sugar abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.488
CN09_00870	CN09_26235	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Sugar abc transporter; Belongs to the binding-protein-dependent transport system permease family	0.825
CN09_00870	CN09_31510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.755
CN09_00870	CN09_31520	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.734
CN09_00870	CN09_31525	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.824
CN09_00875	CN09_00870	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.917
CN09_00875	CN09_07610	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.823
CN09_00875	CN09_26240	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Sugar abc transporter; Belongs to the binding-protein-dependent transport system permease family	0.823
CN09_00875	CN09_31510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.793
CN09_00875	CN09_31520	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_00875	CN09_31530	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.830
CN09_07610	CN09_00875	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.823
CN09_07610	CN09_07615	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	Sugar abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.993
CN09_07610	CN09_26235	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	Sugar abc transporter; Belongs to the binding-protein-dependent transport system permease family	0.848
CN09_07610	CN09_31510	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.789
CN09_07610	CN09_31520	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.804
CN09_07610	CN09_31525	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.528
CN09_07615	CN09_00870	Sugar abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.488
CN09_07615	CN09_07610	Sugar abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family	0.993