CN09_31555 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_31555

ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)

Predicted Functional Partners:

CN09_31545

0.971

glnH

0.956

CN09_31550

0.904

CN09_31540

0.890

CN09_31535

0.854

CN09_21640

0.824

CN09_31980

0.823

CN09_31245

0.818

CN09_32155

0.815

CN09_30990

0.815

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_21640	CN09_31550	CN09_21640	CN09_31550	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.822
CN09_21640	CN09_31555	CN09_21640	CN09_31555	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_21640	glnH	CN09_21640	CN09_32355	Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine ABC transporter substrate-bindnig protein; Similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method- Protein Homology	0.591
CN09_30990	CN09_31550	CN09_30990	CN09_31550	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.810
CN09_30990	CN09_31555	CN09_30990	CN09_31555	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.815
CN09_30990	glnH	CN09_30990	CN09_32355	Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine ABC transporter substrate-bindnig protein; Similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method- Protein Homology	0.597
CN09_31245	CN09_31550	CN09_31245	CN09_31550	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.806
CN09_31245	CN09_31555	CN09_31245	CN09_31555	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.818
CN09_31245	glnH	CN09_31245	CN09_32355	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamine ABC transporter substrate-bindnig protein; Similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method- Protein Homology	0.562
CN09_31535	CN09_31540	CN09_31535	CN09_31540	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.882
CN09_31535	CN09_31545	CN09_31535	CN09_31545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.857
CN09_31535	CN09_31550	CN09_31535	CN09_31550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_31535	CN09_31555	CN09_31535	CN09_31555	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.854
CN09_31540	CN09_31535	CN09_31540	CN09_31535	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.882
CN09_31540	CN09_31545	CN09_31540	CN09_31545	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_31540	CN09_31550	CN09_31540	CN09_31550	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_31540	CN09_31555	CN09_31540	CN09_31555	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.890
CN09_31545	CN09_31535	CN09_31545	CN09_31535	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.857
CN09_31545	CN09_31540	CN09_31545	CN09_31540	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aminotransferase class IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_31545	CN09_31550	CN09_31545	CN09_31550	ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.970

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About