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CN09_31625 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31625" - Peptide ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_31625Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (531 aa)    
Predicted Functional Partners:
CN09_31650
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
 
  0.933
CN09_31645
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
   
  0.925
CN09_31630
Hydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
          0.887
CN09_31655
Regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (784 aa)
 
          0.886
CN09_31620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
          0.841
CN09_31635
Hydantoinase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (518 aa)
 
          0.837
CN09_31615
Hydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (512 aa)
 
          0.806
CN09_31640
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (548 aa)
 
   
  0.748
CN09_25425
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
         
  0.730
CN09_31610
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (75 aa)
   
        0.674
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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