CN09_31700 protein (Agrobacterium rhizogenes)

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Score

CN09_31700

Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology (141 aa)

Predicted Functional Partners:

leuD

0.814

clpX

0.760

CN09_04805

0.746

CN09_14355

0.746

CN09_14460

0.746

CN09_13935

0.744

rph

0.744

CN09_14455

0.729

leuB

0.728

CN09_15370

0.727

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04805	CN09_31700	CN09_04805	CN09_31700	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_13935	CN09_31700	CN09_13935	CN09_31700	ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.744
CN09_14355	CN09_31700	CN09_14355	CN09_31700	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_14455	CN09_14460	CN09_14455	CN09_14460	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	0.999
CN09_14455	CN09_31700	CN09_14455	CN09_31700	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.729
CN09_14455	rph	CN09_14455	CN09_14470	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates	0.999
CN09_14460	CN09_14455	CN09_14460	CN09_14455	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	0.999
CN09_14460	CN09_31700	CN09_14460	CN09_31700	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_14460	clpX	CN09_14460	CN09_10095	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	0.631
CN09_14460	rph	CN09_14460	CN09_14470	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates	0.999
CN09_15370	CN09_31700	CN09_15370	CN09_31700	3-hydroxyisobutyryl-CoA hydrolase; Catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.727
CN09_31700	CN09_04805	CN09_31700	CN09_04805	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_31700	CN09_13935	CN09_31700	CN09_13935	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family	0.744
CN09_31700	CN09_14355	CN09_31700	CN09_14355	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_31700	CN09_14455	CN09_31700	CN09_14455	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxygen-independent coproporphyrinogen-III oxidase-like protein; Involved in the biosynthesis of porphyrin-containing compound	0.729
CN09_31700	CN09_14460	CN09_31700	CN09_14460	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family	0.746
CN09_31700	CN09_15370	CN09_31700	CN09_15370	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	3-hydroxyisobutyryl-CoA hydrolase; Catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.727
CN09_31700	clpX	CN09_31700	CN09_10095	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP	0.760
CN09_31700	leuB	CN09_31700	CN09_17865	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate	0.728
CN09_31700	leuD	CN09_31700	CN09_17875	Endoribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology	3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate; Belongs to the LeuD family. LeuD type 1 subfamily	0.814

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