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CN09_31750 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31750" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_31750Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)    
Predicted Functional Partners:
CN09_31755
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (332 aa)
              0.852
CN09_32300
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
   
          0.763
CN09_26425
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
   
          0.729
CN09_07685
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
   
          0.726
CN09_31745
Endoribonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
              0.681
CN09_32680
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
 
     
  0.669
CN09_26660
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
 
     
  0.666
CN09_31740
Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (429 aa)
              0.663
CN09_23170
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (236 aa)
 
     
  0.637
CN09_00510
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
   
          0.614
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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