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CN09_31805 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31805" - Uncharacterized protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31805Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)    
Predicted Functional Partners:
CN09_18390
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1499 aa)
 
        0.986
CN09_03690
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily (118 aa)
 
   
  0.824
allA
Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source (166 aa)
 
          0.759
CN09_03710
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (412 aa)
 
          0.750
CN09_03670
Allantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
              0.744
CN09_03675
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
 
          0.714
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily (722 aa)
         
  0.655
sucD
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (300 aa)
              0.652
CN09_17885
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the HpcH/HpaI aldolase family (304 aa)
              0.652
CN09_03740
FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (490 aa)
 
          0.637
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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