STRINGSTRING
CN09_31925 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31925" - FAD-dependent oxidoreductase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31925FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (485 aa)    
Predicted Functional Partners:
CN09_31935
Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family (273 aa)
 
     
  0.876
CN09_31930
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method- Protein Homology (1172 aa)
         
  0.867
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family (888 aa)
         
  0.747
CN09_31940
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family (321 aa)
 
          0.698
CN09_31920
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
   
   
  0.632
CN09_31915
NADPH-quinone dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
         
  0.514
CN09_31945
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
              0.489
CN09_16100
2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
     
0.475
CN09_16975
Peptidase M16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M16 family (432 aa)
            0.410
CN09_06580
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (381 aa)
   
   
  0.409
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]