STRINGSTRING
CN09_31965 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_31965" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_31965Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)    
Predicted Functional Partners:
CN09_31970
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial solute-binding protein 3 family (269 aa)
 
          0.593
CN09_31985
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
 
          0.554
CN09_31535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
          0.521
CN09_32000
CTP synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
          0.511
CN09_21325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
 
          0.492
CN09_31995
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (389 aa)
 
          0.477
CN09_31990
Mandelate racemase; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
 
     
  0.474
CN09_31975
Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (238 aa)
              0.432
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.414
CN09_24780
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (541 aa)
 
          0.414
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]